PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G242500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HSF
Protein Properties Length: 416aa    MW: 43252.9 Da    PI: 5.4447
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G242500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.33.4e-35451362102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d++++++isw+++g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k+
  Sevir.6G242500.1.p  45 FLTKTYQLVDDPAVDDVISWNDDGSAFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEKR 126
                         9*****************************************************************99.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k 
  Sevir.6G242500.1.p 127 LLCDIHRRKV 136
                         *******986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.6E-3837129IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5941134IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.9E-3542134IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.0E-3145134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-204568IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-208395IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434084108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-2096108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MAAEQAAAAA ATGGEPPPAT PQPADGVAPS AAAGAAVQRS VPTPFLTKTY QLVDDPAVDD  60
VISWNDDGSA FVVWRPAEFA RDLLPKYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANDCF  120
RRGEKRLLCD IHRRKVTPAA AATGAVTVAA AAAIPIALPV GSPVYSGEEQ VLSSSSSPEP  180
PPLQPQAPSG SGSGGTAASG GGDVGEENDR LRRENARLAR ELGQMKKLCN NILLLMSKYA  240
ATQQLDTAAQ QVEAAKAAAA AAGNCSGESS EAAATPPLLP SVLELLPSCR GAPAPAAAEP  300
TEAAGTEHGD DDGSKAGARL FGVSIGRKRA RDESCNGDDG GVEDPVSRGA AEVKAEPVDA  360
PPDHHHHQQQ EFKDHATEPP QAWPIYRPRP VYHPLRACNG SAGSAGSDHD GSNSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-264014016125Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9650330.0EU965033.1 Zea mays clone 283366 heat shock factor protein 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974114.10.0PREDICTED: heat stress transcription factor B-2b-like isoform X2
SwissprotQ6Z9C81e-147HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLB6TJ681e-180B6TJ68_MAIZE; Heat shock factor protein 7
STRINGGRMZM2G098696_P021e-176(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.15e-57HSF family protein